2009

• "Modeling phase microscopy of transparent three-dimensional objects: a product-of-convolutions approach" Sierra H,., DiMarzio, C.A., and Brooks, D.H, Journal of the Optical Society of America A, 26(5):1268-1276.
• "Computational signal-to-noise ratio analysis for optical quadrature microscopy" Warger II, W.C., and DiMarzio, C.A, Optics Express, 17(4):2400-2422.
• "Mettalic Nanoparticles for Biomedical Imaging", Y. Patel, S. Saha, C. DiMarzio, D. O’Malley, D. Nagesha and S. Sridhar, Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging (ISBI’09), Boston, June 28-July 1.
• "3D effects in DIC images of extended objects", Heidy Sierra, Charles A. DiMarzio, Dana H. Brooks, Proc SPIE, 7184.
• "Acquiring 3D Information about Thick Objects from DIC Images Using Texture Extraction", Heidy Sierra, Charles A. DiMarzio, and Dana H. Brooks JBO (submitted).
• "Reconstructing features of thick objects from phase images", Heidy Sierra, Charles A. DiMarzio, Dana H. Brooks, (Photonics West, SPIE,Proceedings Paper), (submitted) 
• "Multi--Modal Registration of Embryonic Images for In Vitro Fertilization", C.-L. Tsai, S.-C. Liang, and W. Warger II, and C. DiMarzio, IEEE International Conference on BioInformatics and BioEngineering.
• "Opto-photo-thermo-elastic detection using coherent confocal microscope", Eliyahu, Igal, and Charles A. DiMarzio,Proc SPIE, 7177.
• "Comparison of optical quadrature microscopy and Shack-Hartmann wavefront sensor", Patel, Yogesh G., William C. Warger, II, Jerome Ballesta, and Charles A. DiMarzio, Proc SPIE, 7184.
• "Accurate phase measurements for thick spherical objects using optical quadrature microscopy", Warger, William C. II, and Charles A. DiMarzio, Proc SPIE, 7184.
• "Efficient confocal microscopy with a dual-wedge scanner", Warger, William C. II, Stephen A. Guerrera, Zachary M. Eastman, and Charles A. DiMarzio, Proc SPIE, 7184.

2008

• "Phase-subtraction cell-counting method for live mouse embryos beyond the eight-cell stage", Warger II, W.C., Newmark, J.A., Warner, C.M., and DiMarzio, C.A., Journal of Biomedical Optics, 13(3):1-8.
• "The role of tapasin in MHC class I protein trafficking in embryos and T cells" Lampton, P.W., Goldstein, C.Y., and Warner, C.M, J. Reprod. Immunol., 78(1):28-39.
• "Quantitative phase measurements using optical quadrature microscopy" Rockward WS, Thomas AL, Zhao B, et al. APPLIED OPTICS , 47(10): 1684-1696.  
• "Alignment with sub-pixel accuracy for images of multi-modality microscopes using automatic calibration" C.L. Tsai, W.C. Warger II, G.S. Laevsky, C.A. DiMarzio, J. Microsc., in press.
• "Phase subtraction cell counting method and dry mass determination for assessment of viability of mouse embryos" W.C. Warger II, J.A. Newmark, C.M. Warner, C.A. DiMarzio Biomedical Optics, Technical Digest (CD) (Optical Society of America).
• "Modeling of optical quadrature microscopy for imaging mouse embryos" W.C. Warger II and C.A. DiMarzio, Proc. SPIE 6861, 68610T.
• "Full–Field Quantitative Phase Imaging" DiMarzio, Charles A., Proc. SPIE 6861, Article 686107.
• "Modeling phase information for three dimensional objects at different focal planes" Sierra, Heidy, Charles A. Dimarzio, and Dana H. Brooks, Proc. SPIE 6861, Article 68610A .

2007

• "Multispectral method for skin imaging: development and validation" Shi TC, DiMarzio CA , APPLIED OPTICS, 46(36): 8619-8626.
• "In vitro imaging of embryonic stem cells using multiphoton luminescence of gold nanoparticles" Nagesha D, Laevsky GS, Lampton P, et al., INTERNATIONAL JOURNAL OF NANOMEDICINE, 2(4): 813-819.
• "Multimodal optical microscope for detecting viability of mouse embryos in vitro" Warger WC, Laevsky GS, Townsend DJ, et al., JOURNAL OF BIOMEDICAL OPTICS, 12(4), Article Number: 044006.
• "Spatio-temporal Localization of Membrane Lipid Rafts in Mouse Oocytes and Cleaving Preimplantation Embryos" Comiskey, M., and Warner, C.M., JOURNAL OF BIOMEDICAL OPTICS, 12(4): 727-739, Article Number: 044006.  
• "Determination of the number of cells in preimplantation embryos by using noninvasive optical quadrature microscopy in conjunction with differential interference contrast microscopy" Newmark JA, Warger WC, Chang C, et al. , MICROSCOPY AND MICROANALYSIS, 13(2): 118-127.
• "HLA-G Is Found in Lipid Rafts and Can Act as a Signaling Molecule" Comiskey, M., Domino, K.E., and Warner, C.M., Human Immunology, 68(1): 1-11.  

2006

• "A DNA repair protein involved in heart and blood development Molecular" Wang, Y., Shupenko, C.C., Melo, L.F. and Strauss, P.R. Cell Biology 26: 9083-9093.
• "Surface functionalization of gold nanoparticles using hetero-bifunctional poly(ethylene glycol) spacer for intracellular tracking and delivery" Shenoy D, Fu W, Li J, et al. INTERNATIONAL JOURNAL OF NANOMEDICINE, 1(1): 51-57.
• "Phase subtraction cell counting method for live mouse embryos" Warger II, W.C., Newmark, J.A., Warner, C.M., and DiMarzio, C.A. Optical Society of America Proceedings, in press.  
• "Accurate cell counts in live mouse embryos using optical quadrature and differential interference contrast microscopy" Warger II, W.C., Newmark, J.A., Zhao, B., Warner, C.M., and DiMarzio, C.A.. Proc.SPIE, 6090, 30-41.
• "Phase subtraction cell counting method for live mouse embryos" W.C. Warger II, J.A. Newmark, C.M. Warner, C.A. DiMarzio, Biomedical Optics, Technical Digest (CD) (Optical Society of America).
• "Multi-Modal Microscope for Biomedical Research" Laevsky, Gary., William C. Warger, II, Milind Rajadhyaksha, and Charles A. DiMarzio, Presented at Life Science Systems and ApplicationsWorkshop,, 13–14 July 2006, National Library of Medicine, National Institutes of Health, Bethesda, MD.

2005

• "Accurate image registration for quadrature tomographic microscopy" Tsai CL, Warger W, DiMarzio C , MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI, PT 2   3750: 935-942 . (This work was republished in Lecture Notes in Computer Science, see below)
• "Optical quadrature and differential interference contrast to facilitate embryonic cell counts with fluorescence imaging for confirmation" Warger II, W. C., Newmark, J. A., Chang, C. C., Brooks, D. H., Warner, C. M., and DiMarzio, C. A., Proceedings of SPIE, 5699: 334–341.
• "Multimodal optical microscope for imaging biological systems" Townsend, Daniel J., DiMarzio, Charles A., Laevsky, Gary and Rajadhyaksha, Milind, Proceedings of SPIE, 5701:136–145.
• "The wavy-walled bioreactor supports increased cell proliferation and matrix deposition in engineered cartilage constructs" Ericka M. Bueno, ahar Bilgen and Gilda A. Barabino., Tissue Engineering Journal, 11(11-12): 1699-1709.
• "Hetero-bifunctional Poly(ethylene glycol) Modified Gold Nanoparticles as an Intracellular Tracking and Delivery Agent" W. Fu, D. Shenoy, J. Li, C. Crasto, G. Jones, C. Dimarzio, S. Sridhar, M. Amiji NSTI Nanotech 2005, NSTI Nanotechnology Conference and Trade Show, Anaheim, CA, United States, May 8-12, P.324-327 (2005)
• "An Approach to Heterobifunctional Poly(ethyleneglycol) Bioconjugates" Jane Li, Curtis F. Crasto, James S. Weinberg, Mansoor Amiji, Dinesh Shenoy, S. Sridhar, Glenn J. Bubley, Graham B. Jones, Bioorganic & Medicinal Chemistry Letters, V.15(24), P.5558-5561 (2005)
• "Biomedical Applications of Gold Nanoparticles Functionalized using Hetero-Bifunctional Poly (Ethylene Glycol) Spacer" Wei Fu, D. Shenoy, J. Li, C. Crasto, G. Jones, C. DiMarzio, S. Sridhar, M. Amiji, Proceedings of Material Research Symposium, V.845 AA5.4.1 (2005)
• "Accurate Image Registration for Quadrature Tomographic Microscopy" Tsai, Chia-Ling, William Warger, Charles DiMarzio, Lecture Notes in Computer Science,3750: 935 - 942.

2004

• "Computational microscopy in embryo imaging" Hollmann JL, Dunn AK, DiMarzio CA , OPTICS LETTERS, 29(19): 2267-2269.;   
• "Genetics and imaging to assess oocyte and preimplantation embryohealth" Warner, C.M., Newmark, J.A., Comiskey, M, De Fazio, S.R., O’Malley, D.M., Rjadhyaksha, M., Townsend, D.J., McKnight S., Roysam, B., Dwyer, P.J., and DiMarzio, C.A., Reprod.,Ferti.,Develop.,16(7):729-41.
• "Cell Counting in Embryos with Optical Quadrature and Differential Interference Contrast; Confirmation with Fluorescence Imaging" Warger, W. C. II, J. A. Newmark, C. M. Warner, C. A. DiMarzio OSA Frontiers in Optics
• "Engineering a Multimodal Optical Microscope," Townsend, Daniel J., Gustavo E. Herrera, Milind Rajadhyaksha, and Charles A. DiMarzio, Presented at OSA Spring Topical Meetings, Miami. April.

2003

• "Quantitative phase measurements using a quadrature tomographic microscope" Townsend, Daniel J., Quarles, Kregg D., Thomas, Anthony L., Rockward, Willie S., Warner, Carol M., Newmark, Judith A., and DiMarzio, Charles A., Proceedings of SPIE, 4964: 59-65.
• "Evidence that HLA-G is the functional homolog of mouse Qa-2,thePedgene product" Comiskey, M., Goldstein, C. Y., De Fazio, S. R., Mammolenti, M., Newmark, J. A., & Warner, C. M., Hum Immunol., 64(11): 999-1004.
• "The CenSSIS image database" Wu, H., Norum, B., Newmark, J., Salzberg, B., Warner, C.M., DiMarzio, C., and Kaeli, D., Proceedings of the 15th International Conference on Scientific and Statistical Databases, IEEE Press, 117-126.